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Ranked on the record · 29 apps

Best Nonprofit Payroll Software 2026

Facts read 27 Sep 2026 – 21 Oct 2026

Nonprofit payroll needs can involve employees, contractors, tax filings, and workers in multiple states. Compare contractor payments and employee limits with multi-state payroll and nonprofit tax support. Check whether tax filing is included, and whether time tracking is part of the offering. Free-plan availability and paid-from pricing provide additional cost details. Wave, CDM+, and PayFWDs are among the providers included, as are Rippling and ADP Workforce Now. Consider the payroll tasks your organization needs to handle and compare the listed capabilities with your workforce and requirements.

The standings: top 10

NameIn a lineRecord scorePrice fromTry it freeRuns onFacts read
01 Employment HeroIt suits organizations seeking web and mobile HR tools for employee records, leave, onboarding, performance and time tracking.6.0Free planFree planAndroid, iPhone & iPad, Web, API21 Oct 2026
02 HomebaseHomebase suits small businesses with hourly, shift-based teams that need scheduling, timekeeping, and payroll tools.6.0$30 a month, billed yearlyFree planAndroid, iPhone & iPad, Web, API21 Oct 2026
03 WaveWave may suit businesses that need to send invoices, accept online payments, and connect invoice activity with accounting.6.0$72 a yearFree planAndroid, iPhone & iPad, Web, API14 Oct 2026
04 CDM+It suits nonprofit and faith-based organizations that need fund accounting, budgeting, payroll, and invoice processing.5.7$25 a monthFree trialAndroid, iPhone & iPad, Web, Windows28 Sep 2026
05 Sage Payroll5.6£12 a monthFree trialAndroid, iPhone & iPad, Web, Windows21 Oct 2026
06 OnPayOnPay suits small businesses that need payroll alongside HR, benefits, and time tracking.5.5$10 a monthFree trialAndroid, iPhone & iPad, Web, API15 Oct 2026
07 Patriot Payroll5.5$17 a monthFree trialAndroid, iPhone & iPad, Web15 Oct 2026
08 Square Online5.2$49 a monthFree planWeb8 Oct 2026
09 Payroll4Free5.1$35 a month, billed yearlyFree planWeb, Windows, Browser extension30 Sep 2026
10 Justworks BenefitsIt is aimed at small businesses and teams seeking payroll, benefits, HR, compliance, and related integrations.5.0$8 a month—Android, iPhone & iPad, Web1 Oct 2026
01

Employment Hero

by Employment Hero

It suits organizations seeking web and mobile HR tools for employee records, leave, onboarding, performance and time tracking.

Free plan Free trial AndroidiPhone & iPadWebAPI
02

Homebase

Homebase suits small businesses with hourly, shift-based teams that need scheduling, timekeeping, and payroll tools.

AndroidiPhone & iPadWeb+1
Record6.0 Visit
03

Wave

Wave may suit businesses that need to send invoices, accept online payments, and connect invoice activity with accounting.

AndroidiPhone & iPadWeb+1
Record6.0 Visit
04

CDM+

It suits nonprofit and faith-based organizations that need fund accounting, budgeting, payroll, and invoice processing.

AndroidiPhone & iPadWeb+3
Record5.7 Visit
6
OnPay

OnPay suits small businesses that need payroll alongside HR, benefits, and time tracking.

AndroidiPhone & iPadWeb+1 $10 a month Record5.5 Visit
7 AndroidiPhone & iPadWeb $17 a month Record5.5 Visit
8 Web $49 a month Record5.2 Visit
9 WebWindowsBrowser extension $35 a month, billed yearly Record5.1 Visit
10
Justworks Benefits

It is aimed at small businesses and teams seeking payroll, benefits, HR, compliance, and related integrations.

AndroidiPhone & iPadWeb $8 a month Record5.0 Visit
11
Gusto

Gusto is aimed at small businesses looking to manage payroll, benefits, HR, hiring, and workforce time tools in one platform.

AndroidiPhone & iPadWeb+1 $49 a month Record4.9 Visit
12 WebAPI $6 a month Record4.9 Visit
13
SurePayroll

SurePayroll is for small businesses, solopreneurs, and households that need payroll services.

AndroidiPhone & iPadWeb $20 a month Record4.7 Visit
14
Wagepoint

Wagepoint suits Canadian small businesses, bookkeepers, and accountants handling payroll for employees and contractors.

AndroidiPhone & iPadWeb $204 a month Record4.7 Visit
15 AndroidiPhone & iPadWeb $49 a month Record4.6 Visit
16
Dayforce Workforce Management

It suits organizations managing frontline staffing, attendance, labor planning, and operational tasks.

AndroidiPhone & iPadWeb+1 — Record4.2 Visit
17
Paycom

Paycom suits businesses seeking payroll and HR tools in one platform, from small companies to midsized and enterprise businesses.

AndroidiPhone & iPadWeb — Record4.2 Visit
18 AndroidiPhone & iPadWeb+1 — Record4.2 Visit
19
Paylocity

Paylocity presents solutions for small businesses with 1–99 employees, midsize businesses with 100–499 employees, and enterprises with 500 or more employees.

AndroidiPhone & iPadWeb — Record4.2 Visit
20
Rippling

Rippling suits organizations managing hourly, salaried, and contract workers across locations, especially those seeking HR and workforce functions in one system.

AndroidiPhone & iPadWeb — Record4.2 Visit
21
Workday Benefits

Workday Benefits is for organizations administering employee benefits and employees comparing or managing their benefit options.

AndroidiPhone & iPadWeb+1 — Record4.2 Visit
22
ADP Workforce Now

ADP Workforce Now is presented for organizations with 50–999 employees and those with 1,000 or more.

AndroidiPhone & iPadWeb — Record4.1 Visit
23
PayFWDs

PayFWDs suits small businesses, larger organizations, and multi-location teams seeking payroll, HR, and timekeeping tools.

AndroidiPhone & iPadWeb — Record4.0 Visit
24 WebWindowsSelf-hosted — Record3.8 Visit
25 Web $25 a month Record3.7 Visit