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PyMS

PyMS · founded 2019

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PyMS

Free

Open-source GPL-3.0 software · requires Python 3 and dependencies · formatted CSV input

Every plan, in full

On the record

Audience
It is intended to help researchers unfamiliar with command-line software or seeking to increase productivity during data analysis.pyms-jschnab.readthedocs.io · read 9 Oct 2026
Bayesian analysis
Nopyms-jschnab.readthedocs.io · read 23 Sep 2026
Data import formats
CSVpyms-jschnab.readthedocs.io · read 23 Sep 2026
Dependencies
The repository lists Python 3, pandas, NumPy, matplotlib, SciPy, statsmodels, and TkInter as dependencies.github.com · read 9 Oct 2026
Deployment
desktoppyms-jschnab.readthedocs.io · read 23 Sep 2026
Input limit
Input must be a specifically formatted CSV file containing colonization data quantified with a modified grid-line intersect method or an equivalent method.pyms-jschnab.readthedocs.io · read 9 Oct 2026
Installation
The repository documents installation with pip using the package name pyms-plot and running PyMS from the command line.github.com · read 9 Oct 2026
Integrations
The repository lists pandas, NumPy, matplotlib, SciPy, statsmodels, and TkInter as dependencies; it does not describe third-party service integrations.github.com · read 9 Oct 2026
License
The GitHub repository identifies the project as GPL-3.0 licensed.github.com · read 9 Oct 2026
Output
Statistical test p-values are saved to a text file in the same folder as the input CSV.pyms-jschnab.readthedocs.io · read 9 Oct 2026
Purpose
PyMS is a graphical interface for visualizing quantitative mycorrhizal fungi colonization of plant roots and analyzing the data.pyms-jschnab.readthedocs.io · read 9 Oct 2026
Regression models
Nopyms-jschnab.readthedocs.io · read 23 Sep 2026
Release
The PyPI project page lists version 0.9.1, released April 17, 2019.pypi.org · read 9 Oct 2026
Scripting support
Nopyms-jschnab.readthedocs.io · read 23 Sep 2026
Security
The opened documentation and repository pages do not state security certifications or compliance claims.github.com · read 9 Oct 2026
Statistical tests
Yespyms-jschnab.readthedocs.io · read 23 Sep 2026
Statistics
It supports Mann–Whitney tests for two genotypes and Kruskal–Wallis tests followed by Dunn post-hoc tests for multiple genotypes.pyms-jschnab.readthedocs.io · read 9 Oct 2026
Support
The documentation directs users with questions to email [email protected].pyms-jschnab.readthedocs.io · read 9 Oct 2026

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