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partycls

On the record

Additional descriptors
partycls supports additional structural descriptors through DScribe.jorisparet.com · read 12 Oct 2026
Data import formats
XYZ, LAMMPS dumpjorisparet.com · read 23 Sep 2026
Dependencies
The required dependencies listed are a Fortran compiler, NumPy, and scikit-learn.jorisparet.com · read 12 Oct 2026
Deployment
desktopjorisparet.com · read 23 Sep 2026
Descriptors
Built-in structural descriptors include radial, tetrahedral, bond-angle, bond-orientational, compactness, and coordination descriptors.jorisparet.com · read 12 Oct 2026
Documentation
The project provides tutorials, detailed examples, and API documentation.jorisparet.com · read 12 Oct 2026
Documentation and support
The documentation provides Jupyter notebook tutorials, detailed examples, and an API reference.jorisparet.com · read 12 Oct 2026
Installation
The latest stable release can be installed from PyPI with pip install partycls.jorisparet.com · read 12 Oct 2026
Integrations
The documentation names MDTraj and atooms as third-party packages for reading additional trajectory formats.jorisparet.com · read 12 Oct 2026
License
The project repository identifies its license as GPL-3.0.github.com · read 12 Oct 2026
Machine learning
It performs feature scaling, dimensionality reduction, and cluster analysis using scikit-learn and additional built-in algorithms.jorisparet.com · read 12 Oct 2026
Maker
The documentation copyright credits Joris Paret.jorisparet.com · read 12 Oct 2026
Operating systems
The installation documentation says partycls currently supports Unix-based systems.jorisparet.com · read 12 Oct 2026
Purpose
partycls is a Python package for clustering systems of interacting particles by similar structural or dynamical properties.jorisparet.com · read 12 Oct 2026
Python versions
The installation documentation says the package is compatible with Python 3.6 and higher and lists testing on versions 3.6 through 3.9.jorisparet.com · read 12 Oct 2026
Scale limit
The code is optimized for small and medium systems of around 10⁴ particles.jorisparet.com · read 12 Oct 2026
Scientific citation
The project asks users citing partycls in scientific publications to consider citing its 2021 Journal of Open Source Software article.jorisparet.com · read 12 Oct 2026
Scripting support
Yesjorisparet.com · read 23 Sep 2026

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